Mail Address:
Dr. Katharina Hoff Affiliation with the gobics departmentBMBF Project BIOFUNG; teaching R-Courses.
email: katharina (@gobics.de) |
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Research Interests:
- Metagenome analysis
-> for metagenomic gene prediction, see Orphelia web server - Eukaryotic gene prediction
- System biology of breast cancer
- K. J. Hoff
The effect of sequencing errors on metagenomic gene prediction
BMC Genomics 2009, 10:520
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K. J. Hoff, T. Lingner, P. Meinicke, M. Tech
Orphelia: predicting genes in metagenomic sequencing reads
Nucleic Acids Research 2009, 37, W101-W105 -
K. J. Hoff, M. Tech, T. Lingner, R. Daniel, B. Morgenstern, P. Meinicke
Gene prediction in metagenomic fragments: a large scale machine learning approach
BMC Bioinformatics 2008, 9:217
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K. J. Hoff, F. Schreiber, M. Tech, P. Meinicke
The effect of sequencing errors on metagenomic gene prediction
ISMB/ECCB 2009 -
K. J. Hoff, M. Tech, P. Meinicke
Predicting genes on metagenomic pyrosequencing reads with machine learning techniques
GCB 2008 -
K. J. Hoff, M. Tech, T. Lingner, R. Daniel, B. Morgenstern, P. Meinicke
Gene prediction in metagenomic DNA fragments
Horizons in Molecular Biology 2008 -
K. J. Hoff, M. Tech, P. Meinicke
Gene prediction in metagenomic DNA fragments with machine learning techniques
Genomes 2008 -
K. J. Hoff, M. Tech, P. Meinicke
Predicting genes in metagenomic DNA fragments with high specificity using machine learning techniques
ECCB 2008 - K. J. Hoff, M. Tech, P. Meinicke
Predicting genes in short metagenomic sequencing reads with high specificity
Metagenomics 2008 - Basic Statistics, 4th European Summer School "Proteomic Basics - High-Throughput Data Analysis and Statistics", 2010
- Gene prediction in metagenomic sequencing reads, Department für Geo- und Umweltwissenschaften,
Paläontologie & Geobiologie, Ludwig-Maximilians-Universität München, 2009 - Orphelia: a tool for predicting genes in metagenomic sequencing reads, sIT 2009, Göttingen
- PhD Thesis (University of Göttingen, Germany, 2009):
Gene prediction in metagenomic sequencing reads
Supervisor:
Dr. Peter Meinicke
Thesis committee:
Prof. Dr. Burkhard Morgenstern (University of Göttingen)
Prof. Dr. Wolfgang Liebl (TU-München)
Prof. Dr. Lutz Walter (German Primate Center, Göttingen) - Bachelor Thesis (University of Hannover, Germany, 2005):
R-Handbook for Biostatistics
Supervisors:
Prof. Dr. L. A. Hothorn (University of Hannover)
Universitetslektor Jan Eric Englund (Swedish University of Agricultural Sciences)
(English version of thesis, German version of thesis) - Methods Course Bioinformatics for MSc Molecular Biology (Exercises as html or pdf )
- Introduction to Biostatistics with R (Einfuehrung in die Biostatistik mit R)
- Typesetting Scientific Presentations with the LaTeX-Beamer Class (Course Script)
- Bioinformatics Tutorial for Molecular Biology Students
- Biotechnology Tutorial for Molecular Biology Students
- since 07/2010: Postdoc at gobics department and at Institute for Mathematics and Computer Sciences, University of Greifswald
- 01/2010-06/2010: Postdoc at Dept. Medical Statistics
- 11/2009-12/2009: Postdoc at gobics department
- 2006 - 2009: PhD studies at gobics department
- 2005 - 2006: MSc segment of MSc/PhD program Molecular Biology (University of Goettingen)
- 2004 - 2005: Erasmus studies and internship at the Swedish University of Agricultural Sciences, Alnarp (Sweden),
6-months internship in the research group for plant lipid biotechnology. - Feb./March 2003: Internship at the Institute for Pharmacognosy, Department for Pharmacy, Semmelweis University Budapest (Hungary).
- 2002 - 2005: BSc program Plantbiotechnology (University of Hannover), Thesis: R-Handbook for Biostatistics.
- 2002: Abitur with the majors German, Biology and English at Stefan-George-Gymnasium in Bingen am Rhein.