Software tools available through GOBICS
(Göttingen Bioinformatics Compute Server):
- AUGUSTUS - Gene prediction for eukaryotes
- UFO - Ultra-fast functional profiling of large protein sequence collections
- MarVis - Clustering and Visualization of Metabolic Markers
- jpHMM-HIV - Subtyping HIV-1 with a Jumping Profile Hidden Markov Model (jpHMM)
-
Anchored DIALIGN - Multiple sequence alignment with user-defined constraints
- CHAOS-DIALIGN
- Pair-wise and multiple alignment of genomic sequences
- DIALIGN-TX - Multiple Protein and DNA Alignment
- Dialign with secondary structure - Multiple protein sequence alignment using secondary structure prediction
- ARGUS - Coalescent model with recombination for HIV classification
- TiCo - Postprosessing of gene predictions for prokaryotes
- YACOP - Gene prediction for prokaryotes
- Orphelia - Predicting genes in metagenomic sequencing reads
- OrthoSelect - Selection of orthologs in phylogenomics
- TreePhyler - Fast taxonomic profiling of metagenomes
- Taxy - Ultra-fast and read length invariant estimates of metagenome taxonomic composition
Other software tools developed by our group or in collaborations:
- DIALIGN
- Multiple DNA and protein alignment by segment comparison
(Bielefeld)
- CHAOS
- Pairwise local alignment. By
Mike Brudno (Toronto)
- AltAVisT
- Comparison of
alternative multiple sequence alignments (Bielefeld)
- AGenDA -
Gene prediction by comparative sequence analysis (Bielefeld)