Software tools available through GOBICS
(Göttingen Bioinformatics Compute Server):
- rasbhari - spaced seed optimization for alignment-free sequence comparison
-
spaced words and
kmacs - alignment free
sequence comparison
- AUGUSTUS - Gene prediction for eukaryotes
- MarVis - Clustering and Visualization of Metabolic Markers
- jpHMM - Recombination detection in HIV-1 and HBV with a jumping profile Hidden Markov Model (jpHMM)
-
DIALIGN - multiple sequence alignment; various program versions available
- TiCo - Postprosessing of gene predictions for prokaryotes
- YACOP - Gene prediction for prokaryotes
- OrthoSelect - Selection of orthologs in phylogenomics
- Tax4Fun - predicting functional profiles from metagenomic 16S rRNA data
- TreePhyler - Taxonomic profiling of metagenomes
- Taxy and Taxy-Pro - Fast estimation of metagenomic taxon abundances
Other software tools developed by our group or in collaborations:
- DIALIGN
- Multiple DNA and protein alignment by segment comparison
(Bielefeld)
- CHAOS
- Pairwise local alignment. By
Mike Brudno (Toronto)
- AltAVisT
- Comparison of
alternative multiple sequence alignments (Bielefeld)
- AGenDA -
Gene prediction by comparative sequence analysis (Bielefeld)