gobics.de [ Anne-Kathrin Schultz]

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Address: Dipl.-Math. Anne-Kathrin Schultz Universität Göttingen Institut für Mikrobiologie und Genetik Abteilung für Bioinformatik (Raum 220) Goldschmidtstr. 1 37077 Göttingen Germany eMail: anne [at] gobics [dot] de Phone: +49 551 39 13884 FAX: +49 551 39 14929

Teaching:

• Statistik für Biologiestudierende, SS 2010
• Bioinformatik-Praktikum für Fortgeschrittene

Research Interests:

• HIV-1 subtyping and recombination detection
• Recombination in HBV
• Chimera detection in 16s rRNA

Software:

• jpHMM-HIV - A jumping profile HMM to detect genomic recombinations in HIV-1

Publications:

   Papers in journals and refereed conference proceedings:

• I. Bulla, A.-K. Schultz, F. Schreiber, M. Zhang, T. Leitner, B. Korber, B. Morgenstern, M. Stanke (2010)
  HIV classification using the coalescent theory
  Bioinformatics, 26(11):1409-1415 (pdf).
• M. Zhang, B. Foley, A.-K. Schultz, J. Macke, I. Bulla, M. Stanke, B. Morgenstern, B. Korber, T. Leitner (2010)
  The role of recombination in the emergence of a complex and dynamic HIV epidemic
  Retrovirology 2010, 7:25, doi:10.1186/1742-4690-7-25
• A.-K. Schultz, M. Zhang, I. Bulla, T. Leitner, B. Korber, B. Morgenstern, M. Stanke (2009)
  jpHMM: Improving the reliability of recombination prediction in HIV-1.
  Nucleic Acids Research, 37 (Web Server Issue), W647 - W651 (pdf).
• A.-K. Schultz, M. Zhang, T. Leitner, B. Korber, B. Morgenstern, M. Stanke
  jpHMM: Erkennung von Rekombinationen bei HIV
  BIOforum 2/2008, 44-46.
• A.-K. Schultz, M. Zhang, T. Leitner, C. Kuiken, B. Korber, B. Morgenstern, M. Stanke (2006)
  A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
  BMC Bioinformatics 7:265 (pdf).
• M. Zhang, A.-K. Schultz, C. Calef, C. Kuiken, T. Leitner, B. Korber, B. Morgenstern, M. Stanke (2006)
  jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1
  Nucleic Acids Research, 34 (Web Server Issue), W463 - W465 (pdf).
• M. Zhang, A.-K. Schultz, B. Morgenstern, M. Stanke, B. Korber, T. Leitner (2005)
  Greater HIV Genome Diversities Inferred From Re-subtyping of HIV Database Sequences
  Proc. German Conference on Bioinformatics (Discovery Notes, Poster Abstracts), pp 5 - 7.

   Posters:

• A.-K. Schultz, M. Zhang, I. Bulla, T. Leitner, B. Korber, B. Morgenstern, M. Stanke
  jpHMM: Improving the reliability of recombination prediction in HIV-1 (pdf),
  16th International HIV Dynamics & Evolution 2009, Oxford, UK
• A.-K. Schultz, M. Zhang, I. Bulla, T. Leitner, C. Kuiken, B. Korber, B. Morgenstern, M. Stanke
  jpHMM: A jumping profile HMM to detect recombinations in HIV-1,
  European Conference on Computational Biology, ECCB 2008, Cagliari, Italy
• A.-K. Schultz, M. Zhang, I. Bulla, T. Leitner, C. Kuiken, B. Korber, B. Morgenstern, M. Stanke
  jpHMM: A jumping profile HMM to predict recombinations in HIV-1,
  German Conference on Bioinformatics, GCB 2008, Dresden, Germany
• A.-K. Schultz, M. Zhang, T. Leitner, C. Kuiken, B. Korber, B. Morgenstern, M. Stanke
  jpHMM: Detecting recombinations in HIV-1,
  15th International HIV Dynamics & Evolution 2008, Santa Fe, USA
• A.-K. Schultz, M. Zhang, T. Leitner, C. Kuiken, B. Korber, B. Morgenstern, M. Stanke
  A Jumping Profile HMM to predict recombinations in HIV-1 sequences,
  13th International Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology 2007, Lisbon, Portugal
• Anne-Kathrin Schultz and Mario Stanke
  A Jumping Profile HMM for Remote Protein Homology Detection (pdf),
  Proceedings of the German Conference on Bioinformatics, 91-92, GCB 2004, Bielefeld, Germany

   Diplomarbeit:

• Ein springendes Profil-Hidden-Markov-Modell und Anwendungen auf Rekombinationen in viralen Genomen (pdf),
  2005, Universität Göttingen, Germany

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