gobics.de [Ingo Bulla]

Research Interests:

• Coalescence Theory for Recombining Sequences
• HIV subtyping and recombination detection
• Recombination in HBV
• Chimera detection in 16s rRNA
• Hidden Semi-Markov models
• Financial time series
• Stochastic partial differential equations

Software:

• ARGUS - A virus classification tool

Publications:

• I. Bulla, A.-K. Schultz, F. Schreiber, M. Zhang, T. Leitner, B. Korber, B. Morgenstern, M. Stanke (2010)
  HIV classification using the coalescent theory
  Bioinformatics, 26(11):1409-1415 (Preprint)
• M. Zhang, B. Foley, A.-K. Schultz, J. Macke, I. Bulla, M. Stanke, B. Morgenstern, B. Korber and T. Leitner (2010)
  The role of recombination in the emergence of a complex and dynamic HIV epidemic
  Retrovirology 2010, 7:25, doi:10.1186/1742-4690-7-25
• I. Bulla, J. Bulla, O. Nenadic (2010)
  hsmm - an R package for analyzing Hidden Semi-Markov Models
  Computational Statistics and Data Analysis, vol. 54, no. 3, 611-619
• A.-K. Schultz, M. Zhang, I. Bulla, T. Leitner, B. Korber, B. Morgenstern, M. Stanke (2009)
  jpHMM: Improving the reliability of recombination prediction in HIV-1
  Nucleic Acids Research, 37 (Web Server Issue), W647 - W651
• J. Bulla, I. Bulla (2006)
  Stylized Facts of Financial Time Series and Hidden Semi-Markov Models
  Computational Statistics and Data Analysis, vol. 51, no. 4, 2192-2209
• I. Bulla (2005)
  Dirichlet Problem with Stochastic Coefficients
  Stochastics and Dynamics, vol. 5, no. 4, 555-568

• I. Bulla, A.-K. Schultz, M. Zhang, T. Leitner, B. Korber, B. Morgenstern, M. Stanke
  HIV Classification Using Coalescent Theory,
  HIV Dynamics & Evolution, 2009, Oxford, UK
• I. Bulla, A.-K. Schultz, M. Zhang, T. Leitner, B. Korber, B. Morgenstern, M. Stanke
  Classification of HIV-1 Using Coalescent Theory,
  European Conference on Computational Biology, ECCB 2008, Cagliari, Italy
• I. Bulla, A.-K. Schultz, F. Schreiber, M. Zhang, T. Leitner, B. Korber, B. Morgenstern, M. Stanke
  Classification of HIV-1 Using Coalescent Theory,
  German Conference on Bioinformatics, GCB 2008, Dresden, Germany
• I. Bulla
  HIV Recombinants,
  Cherry Bud Workshop, 2007, Yokohama, Japan

• I. Bulla
  Existence and Uniqueness of Solutions of Linear Elliptic Stochastic Partial Differential Equations with Distributive Source Term
  Mathematica Gottingensis, no. 3

Referee service for:

• Algorithms for Molecular Biology
• Computational Economics
• Computational Statistics & Data Analysis
• Journal of Statistical Software
• Stochastics and Dynamics