gobics.de: Molecular Biology Methods Course

gobics.de [Molecular Biology Methods Course ]


Phylogentic Sequence Analysis

Fabian Schreiber

Handout | Exercises | Links

Links & Literature

Homology Search:

  • BLAST
  • FASTA

    Multiple Sequence Alignment:

  • Clustalw
  • T-Coffee
  • Muscle
  • Dialign

    Phylogenetic Reconstruction:

    Neighbor-Joining

  • DNAdist Construction of a distance matrix from a multiple sequence alignment
  • Neighbor-Joining Construction of a phylogenetic tree using the Neighbor-Joining algorithm

    Parsimony

  • DNApars Parsimony analysis from a multiple sequence alignment

    Maximum Likelihood

  • FastDNAml Maximum likelihood calculation from a multiple sequence alignment

    Introductions, Tutorials

  • Introduction
  • History of life
  • Tree of life project
  • Phylogeny Programs
  • Description of different Phylogeny Methods
  • Phylogeny Tutorial
    A Primer of Phylogenetic Procedures