gobics.de [Molecular Biology, Methods]



Burkhard Morgenstern

Molecular Biology
Methods Course 2006

Multiple Sequence Alignment


WWW server for multiple alignment:

CLUSTAL W (EBI)
DIALIGN (Univ. Göttingen)
T COFFEE (CNRS)
GIBBS MOTIF SAMPLER (WADSWORTH CENTER)
Mafft (Kyoto)
ProbCons (Stanford University)

Example reference sets from BAliBASE:

1r69.fa
1r69.anc
1ubi.fa

Reference alignments based on 3D structure:

1r69 reference alignment
1ubi reference alignment

Conserved motif included in random sequences:

rand3

Further information: