Software developed by BM and collaborators:
- Multiple alignment with user-defined anchor points
- DIALIGN - Multiple DNA and protein alignment by segment comparison at GOBICS
- CHAOS - Pairwise local alignment. Developed by Mike Brudno, Stanford Univ.
- CHAOS-DIALIGN
- WWW server for pair-wise and
multiple alignment of genomic sequences - AltAVisT - Comparison of alternative multiple sequence alignments
- AGenDA - Gene prediction by comparative sequence analysis
- DIALIGN-T
- Multiple Protein Alignment.
Developed by Amarendran R. Subramanian.